chrisamiller

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docker-meme

 1  0
docker image for the MEME package (http://meme.ebi.edu.au/)
Dockerfile

docker-genomic-analysis

 2  6
Basic docker image for ad-hoc genomic analyses

docker-homer

 0  2
fork of the quay.io homer image, moving annotations to my hardcoded link
Perl

rtm-cli

 8  2
A command-line Remember the Milk client written in perl

bioinfoSnippets

 2  2
Short snippets of code useful for bioinformatics and genomics
Python

docker-R-singlecell

 2  0
tools for single-cell RNAseq analysis

docker-r-seurat

 0  1
tools for single-cell RNAseq analysis, incl seurat
R

fishplot

 126  39
Create timecourse "fish plots" that show changes in the clonal architecture of tumors

readDepth

 24  11
R package for inferring copy number from read depth

copyCat

 16  9
a parallel R package for detecting copy-number alterations from short sequencing reads

rnaseq_tutorial

 1  1
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

docker-bsseq-r

 0  1
docker image for doing bsseq analysis in R

docker-copycat

 0  1
docker image for the R copyCat package
Ruby

commute-times

 4  1
calculate drive times from multiple locations and visualize them in google earth

davidapi

 3  1
A ruby wrapper for a few of the DAVID API functions for functional gene annotation (http://david.abcc.ncifcrf.gov/)

iTunes-to-Guayadeque

 2  0
copies song ratings from iTunes to Guaydeque music player

RMEmod

 1  2
A tool for discovering functional modules by identifying recurrent and mutually exclusive mutational patterns in tumors
Shell

igvScreenshot

 4  0
Create static screenshots of genomic regions using IGV.