Chris Miller http://www.chrismiller.science/ chrisamiller@gmail.com Associate Professor of Oncology 122 19 82 256 89 No Language docker-meme 1 0 docker image for the MEME package (http://meme.ebi.edu.au/) Dockerfile docker-genomic-analysis 5 7 Basic docker image for ad-hoc genomic analyses docker-homer 0 4 fork of the quay.io homer image, moving annotations to my hardcoded link Perl rtm-cli 8 2 A command-line Remember the Milk client written in perl bioinfoSnippets 2 2 Short snippets of code useful for bioinformatics and genomics Python docker-R-singlecell 2 0 tools for single-cell RNAseq analysis R fishplot 165 46 Create timecourse "fish plots" that show changes in the clonal architecture of tumors readDepth 32 10 R package for inferring copy number from read depth copyCat 22 10 a parallel R package for detecting copy-number alterations from short sequencing reads rnaseq_tutorial 2 1 Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation. docker-bsseq-r 0 1 docker image for doing bsseq analysis in R docker-copycat 0 1 docker image for the R copyCat package Ruby commute-times 4 1 calculate drive times from multiple locations and visualize them in google earth davidapi 3 1 A ruby wrapper for a few of the DAVID API functions for functional gene annotation (http://david.abcc.ncifcrf.gov/) iTunes-to-Guayadeque 2 0 copies song ratings from iTunes to Guaydeque music player RMEmod 1 2 A tool for discovering functional modules by identifying recurrent and mutually exclusive mutational patterns in tumors Shell igvScreenshot 5 0 Create static screenshots of genomic regions using IGV. docker-phlat 2 1 dockerization of phlat hla typing tool
