theHumanBorch https://www.borch.dev/ ncborch@gmail.com Head of Comp Bio at Omniscope.ai | Clinical Pathologist MD/PhD 130 1 43 577 87 No Language scTregs 4 1 fishplot 1 0 Create timecourse "fish plots" that show changes in the clonal architecture of tumors GDC-tricks 1 0 tricks to use the Genomics Data Commons portal from the National Cancer Institute HLAClustRView 1 0 R package specialized in HLA typing clustering and visualization based on specific similarity metrics tcrpheno_analysis 1 0 Code for analysis of TCR and T cell state data in Lagattuta, et al. bioRxiv (2023) vdjdb-db 1 0 Git-based TCR database storage & management. Submissions welcome! Maier_et_al_nature_2020 0 1 This repository contains scripts used for analysis and figure generation in Maier, B., Leader, A.M., Chen, S.T. et al. A conserved dendritic-cell regulatory program limits antitumour immunity. Nature 580, 257–262 (2020). https://doi.org/10.1038/s41586-020-2134-y psupertime 0 1 psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels HTML TRGAted 9 6 Survival Analysis for Protein-Level TCGA Analysis ncborcherding.github.io 1 0 Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes PostScript ccRCC 18 6 Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma R scRepertoire 291 49 A toolkit for single-cell immune profiling escape 109 14 Easy single cell analysis platform for enrichment utility 79 6 Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR Trex 40 1 Using TCR and expression for graph embedding Ibex 16 1 CellPilot 3 0 aRt 1 0 Making art using R exigence 1 0 TCGAcalc 0 1 Some requested analyses tools for TCGA work
