STL Devs | ryansmcgee

Ryan Seamus McGee
https://twitter.com/RS_McGee
Postdoc at WUSTL, PhD at UW. How does selection shape info in genomes, networks, collectives? Eco-Evo-Info theory, CS, Neuro, Dynamics, Epi, Feathered dinos. he
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Code and data associated with "Model-driven mitigation measures for reopening schools during the COVID-19 pandemic." (2021)

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Supporting data and code for McGee et al. "Proactive testing in a partially vaccinated population." (2021).

Jupyter Notebook

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Code and data accompanying McGee et al. "Improving the accuracy of bulk fitness assays by correcting barcode processing biases." bioRxiv (2023).

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Python study group depository

Python

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Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

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A simple package for simulations of microbial growth experiments with realistic sources of error.