Scott Handley http://evomics.org handley.scott@gmail.comProfessor @ Washington University in St. Louis. Founder and occasional director of some bioinformatics Workshops. 49 2 34 134 56 No Language HIV-Oral 1 1 Analysis of the oral bacterial microbiome by 16S amplicon analysis in HIV infected men rotabiome 1 0 Code used to generate the results of the rotabiome studyHTML awesome-virome 36 7 A listing of software, tools and databases useful for virome analysis Microbiome-Analysis-Using-R 26 23 Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since. tldrAI 1 1 AI-powered quick reference for R functions that provides concise, practical help using LLMs (Claude/OpenAI). Get example-focused documentation with customizable character voices, smart caching, and offline support. tldrAI makes R function documentation more accessible, efficient, and even entertaining. human_volunteer_rotabiome 0 5 Analysis of 16S rRNA (dada2 amplicon sequence variants) from human volunteers given various vaccines following two different antibiotics treatments compared to no antibiotics. WNV-antibiotics 0 2 West Nile Virus Infection in mice treated with vehicle or various antibiotics: https://www.ncbi.nlm.nih.gov/pubmed/29590614Python hecatomb 57 12 hecatomb is a virome analysis pipeline for analysis of Illumina sequence data ICTV-git 3 1 Git-based viral taxonomy management system - track changes, migrate datasets, and cite specific versions. Website: https://shandley.github.io/ICTV-git/ awesome-vep 1 0 decatomb 1 0 Viral contig analysis (hecatomb-lite)R dada2-workflow 1 1 Generalized dada2 workflow. Refer to the wiki for help and troubleshooting. diversityGPT 1 0 ggplateplus 1 0 microFGT 1 1 Package to assist in integrative analysis of Female Genital Tract Microbiome Data viromePower 1 0 A package for virome study power analysisShell virus_isolate_sequencing 2 1 Miscellaneous scripts for handling Illumina sequencing of virus isolates. viral_genome_sop 0 1
