Scott Handley http://evomics.org handley.scott@gmail.comProfessor @ Washington University in St. Louis. Founder and occasional director of some bioinformatics Workshops. 43 2 22 90 47 No Language HIV-Oral 1 1 Analysis of the oral bacterial microbiome by 16S amplicon analysis in HIV infected men rotabiome 1 0 Code used to generate the results of the rotabiome studyHTML Microbiome-Analysis-Using-R 27 24 Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since. human_volunteer_rotabiome 0 5 Analysis of 16S rRNA (dada2 amplicon sequence variants) from human volunteers given various vaccines following two different antibiotics treatments compared to no antibiotics. WNV-antibiotics 0 2 West Nile Virus Infection in mice treated with vehicle or various antibiotics: https://www.ncbi.nlm.nih.gov/pubmed/29590614Python hecatomb 57 12 hecatomb is a virome analysis pipeline for analysis of Illumina sequence data decatomb 1 0 Viral contig analysis (hecatomb-lite)R dada2-workflow 1 1 Generalized dada2 workflow. Refer to the wiki for help and troubleshooting.Shell virus_isolate_sequencing 2 1 Miscellaneous scripts for handling Illumina sequencing of virus isolates. viral_genome_sop 0 1
