BrentLab

Jupyter Notebook

TFPertRespExplainer

 2  1
Predict genes' response to perturbations and explains which genomic factors determine the response predictions.
Python

Dual_Threshold_Optimization

 3  0
Dual threshold optimization for identifying convergent evidence: TF binding locations and TF perturbation responses.

TFA-evaluation

 1  2
R

NetProphet_2.0

 11  5
A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.

NetProphet_3.0

 1  0

brentlabRnaSeqTools

 0  1

callingCardsTools

 0  1
Tools for both data processing and analysis of Calling Cards sequence data