HolyLab

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FastScanningAndDPI

 1  0
Directory of code for OCPI fast scanning / DPI publication
C++

Imagine

 1  1
A graphical interface for recording with OCPI microscopes.
Julia

HolyLabRegistry

 14  3
Julia package registry for the Holy lab at Washington University in St. Louis

RegisterQD.jl

 10  5
Image registration with the QuadDIRECT optimization algorithm

GPCRAnalysis.jl

 7  0
Routines for analysis of protein structures

RegisterDeformation.jl

 6  4
Representation of spatial deformations

BlockRegistration.jl

 4  1
Deformable image registration via shift-alignment of blocks

FastScanning.jl

 4  0
Determine camera/laser timing during fast OCPI acquisitions based on measured hardware responses.

ImagineHardware.jl

 4  0
Access hardware information for essential microscope components used in OCPI microscopes: piezo positioners, amplifiers, cameras, etc

ZWarpedArrays.jl

 4  0
An image array type for which each 2D slice can (lazily) undergo a different affine coordinate transformation

CachedArrays.jl

 3  1
Arrays that cache elements in leading dimensions

RegisterMismatch.jl

 3  2
This package is separated from BlockRegistraton.

ExtractPSF.jl

 2  0
Find point emitters in images and extract point spread functions

ImagineInterface.jl

 2  2
Read and write Imagine analog and digital recordings and commands

InterleavedImages.jl

 2  0
Lazy interleaving of images (arrays) along a chosen dimension

ISVD.jl

 2  0
ISVD provides incremental singular value decomposition. This package is separated from CellSegmentation

RegisterOptimize.jl

 2  1
This package is separated from BlockRegistraton.

BlockRegistrationScheduler.jl

 1  0
Multi-core image registration scheduler

Diffusion.jl

 1  0
Simulations of diffusion on the disc with boundary conditons

EcoTrialStructure.jl

 1  0
Data import for experiments on neuroeconomic decision-making

ImageInterpLast.jl

 1  0
Lazy interpolation of images along the last dimension (usually time)

Imagine.jl

 1  1
Work-in-progress translation of Imagine to Julia

ImaginePlots.jl

 1  0
Plotting of Imagine's hardware signals (complements ImagineInterface)

ImagineProcedures.jl

 1  0
Link preparation with analysis of Imagine recordings

RegisterCore.jl

 1  2
Image registration (low-level types and utilities)

RegisterPenalty.jl

 1  1
This package is separated from BlockRegistraton.

RegisterWorkerShell.jl

 1  0
This package is separated from BlockRegistratonScheduler.

RFFT.jl

 1  0
In-place real FFTs for Julia

StitchDPI.jl

 1  0
Align and stitch pairs of images acquired with a split field of view

WarpedImageSeries.jl

 1  0
Lazy warping of a series (usually timeseries) of images

ImagineWorker.jl

 0  1
Worker thread module for the (WIP) Julia version of Imagine

RegisterFit.jl

 0  1
RegisterFit contains a number of functions that calculate affine transformations that minimize mismatch. This package is separated from BlockRegistraton

RegisterMismatchCuda.jl

 0  1
This package is separated from BlockRegistraton.