HolyLab

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  • Holy Lab
  • http://holylab.wustl.edu
  • holy@wustl.edu
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Imagine

1 0
A graphical interface for recording with OCPI microscopes.

Julia

Julia package registry for the Holy lab at Washington University in St. Louis
Determine camera/laser timing during fast OCPI acquisitions based on measured hardware responses.
Image registration with the QuadDIRECT optimization algorithm
Arrays that cache elements in leading dimensions
Access hardware information for essential microscope components used in OCPI microscopes: piezo positioners, amplifiers, cameras, etc
Read and write Imagine analog and digital recordings and commands
Read and write Imagine analog and digital recordings and commands
Representation of spatial deformations
This package is separated from BlockRegistraton.
An image array type for which each 2D slice can (lazily) undergo a different affine coordinate transformation
Deformable image registration via shift-alignment of blocks
Multi-core image registration scheduler
Find point emitters in images and extract point spread functions
Find point emitters in images and extract point spread functions
Lazy interpolation of images along the last dimension (usually time)
Work-in-progress translation of Imagine to Julia
Link preparation with analysis of Imagine recordings
Lazy interleaving of images (arrays) along a chosen dimension
Image registration (low-level types and utilities)
This package is separated from BlockRegistraton.
This package is separated from BlockRegistraton.
This package is separated from BlockRegistratonScheduler.
Align and stitch pairs of images acquired with a split field of view
Lazy warping of a series (usually timeseries) of images
Delayed function evaluation and caching of returned values
CachedInterpolations implements a performance enhancement for quadratic interpolation of a large multidimensional array. This package is separated from BlockRegistration
Arrays indexed symmetrically around zero
A collection of analyses to run on Imagine signals and images.
Plotting of Imagine's hardware signals (complements ImagineInterface)
Plotting of Imagine's hardware signals (complements ImagineInterface)
Worker thread module for the (WIP) Julia version of Imagine
Fitting multi-kernel linear models to data
Control piezoelectric actuators via serial commands
This package is separated from BlockRegistratonScheduler.
RegisterFit contains a number of functions that calculate affine transformations that minimize mismatch. This package is separated from BlockRegistraton
This package is separated from BlockRegistraton.
This package is separated from BlockRegistraton.
This package is separated from BlockRegistraton.
This package is separated from BlockRegistraton
This package is separated from BlockRegistratonScheduler.
This package is separated from BlockRegistratonScheduler.

RFFT.jl

0 0
In-place real FFTs for Julia
A convenient set of aliases for types from Unitful.jl

Matlab

Code for analysis of profiling mass spectrometry datasets