Holy Lab http://holylab.wustl.edu holy@wustl.edu None 49 87 28 No Language FastScanningAndDPI 1 0 Directory of code for OCPI fast scanning / DPI publication C++ Imagine 1 1 A graphical interface for recording with OCPI microscopes. Julia HolyLabRegistry 17 4 Julia package registry for the Holy lab at Washington University in St. Louis RegisterQD.jl 10 5 Image registration with the QuadDIRECT optimization algorithm GPCRAnalysis.jl 7 0 Routines for analysis of protein structures RegisterDeformation.jl 6 4 Representation of spatial deformations BlockRegistration.jl 4 1 Deformable image registration via shift-alignment of blocks FastScanning.jl 4 0 Determine camera/laser timing during fast OCPI acquisitions based on measured hardware responses. ImagineHardware.jl 4 0 Access hardware information for essential microscope components used in OCPI microscopes: piezo positioners, amplifiers, cameras, etc ZWarpedArrays.jl 4 0 An image array type for which each 2D slice can (lazily) undergo a different affine coordinate transformation CachedArrays.jl 3 1 Arrays that cache elements in leading dimensions RegisterMismatch.jl 3 2 This package is separated from BlockRegistraton. ExtractPSF.jl 2 0 Find point emitters in images and extract point spread functions ImagineInterface.jl 2 2 Read and write Imagine analog and digital recordings and commands InterleavedImages.jl 2 0 Lazy interleaving of images (arrays) along a chosen dimension ISVD.jl 2 0 ISVD provides incremental singular value decomposition. This package is separated from CellSegmentation RegisterOptimize.jl 2 1 This package is separated from BlockRegistraton. BlockRegistrationScheduler.jl 1 0 Multi-core image registration scheduler Diffusion.jl 1 0 Simulations of diffusion on the disc with boundary conditons EcoTrialStructure.jl 1 0 Data import for experiments on neuroeconomic decision-making ImageInterpLast.jl 1 0 Lazy interpolation of images along the last dimension (usually time) Imagine.jl 1 1 Work-in-progress translation of Imagine to Julia ImaginePlots.jl 1 0 Plotting of Imagine's hardware signals (complements ImagineInterface) ImagineProcedures.jl 1 0 Link preparation with analysis of Imagine recordings RegisterCore.jl 1 2 Image registration (low-level types and utilities) RegisterPenalty.jl 1 1 This package is separated from BlockRegistraton. RegisterWorkerShell.jl 1 0 This package is separated from BlockRegistratonScheduler. RFFT.jl 1 0 In-place real FFTs for Julia StitchDPI.jl 1 0 Align and stitch pairs of images acquired with a split field of view WarpedImageSeries.jl 1 0 Lazy warping of a series (usually timeseries) of images ImagineWorker.jl 0 1 Worker thread module for the (WIP) Julia version of Imagine RegisterFit.jl 0 1 RegisterFit contains a number of functions that calculate affine transformations that minimize mismatch. This package is separated from BlockRegistraton RegisterMismatchCuda.jl 0 1 This package is separated from BlockRegistraton.
