Topp-Roots-Lab ctopp@wustl.edu A collection of projects designed to analyze phenotypic plant data by the Topp lab at the Donald Danforth Plant Science Center. 16 14 18 C++ 3D-Sorghum-Inflorescence 1 1 Gia3D 1 0 Root3D Skeleton Traits by Olga Symonova. Also known as "skel" or "Skeleton". rsa-tools 1 0 External tools used by the GUI for analyzing plant root system architecture 3D_reconstruction 0 3 Algorithm for 3d reconstruction from rotational image sequence HTML TopoRoot 1 0 Topp-Roots-Lab.github.io 1 1 Lab website Java rsa-gui 3 4 User-controlled pipeline for analyzing plant root system architecture MATLAB Grapevine-inflorescence-architecture 3 1 Python 3d-root-crown-analysis-pipeline 3 1 A pipeline to process 3-D volumes (.raw) of maize root crowns. Also known as XRCAP. python-rawtools 0 2 Utility library for consuming and manipulating x-ray volume data in .raw format. taghelper 0 1 Python scripts that allow synching of fieldbooks, the tagdb, and barcode strings. R timeseries_analysis 0 4 scripts used for analysis of root growth
