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outreach

 5  4
Repository for Outreach Activities at DDPSC

2022_CSTM_R_Data_Visualization_Workshop

 0  1
Provides attendees with an introduction to data visualization using ggplot2
HTML

plantcv-setaria-molplant

 1  1
PlantCV image analysis scripts used in Fahlgren N, Feldman M, Gehan MA, Wilson MS, Shyu C, Bryant DW, et al. A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria. Mol Plant. 2015;8: 1520–1535.

plantcv-web

 0  2
PlantCV website repository
Java

PhenoFront

 1  0
LemnaTec front end.
Jupyter Notebook

plantcv-workshop

 15  14
PlantCV Workshops

plantcv-v2-paper

 10  1
PlantCV image analysis scripts used in the PlantCV v2.0 paper

apps-phenotyping

 7  3
The following are scripts and instruction necessary to set up 4 Raspberry Pi Powered Imaging Platforms

plantcv-binder

 6  5
A repository for interactive PlantCV documentation using Binder

phenome2020-workshop

 5  2
Phenome 2020 Digital Phenotyping workshop materials

plantcv-nappn2021-workshop

 4  3
NAPPN 2021 Conference PlantCV virtual workshop materials

plantcv-tutorial-v4-VIS-single-plant

 4  0
PlantCV Tutorial using release-4.0 for single plant, VIS image (RGB) analysis

plantcv-seeds

 3  1
Seed phenotyping with PlantCV

plantcv-tutorial_leaf_instance_segmentation

 2  1

plantcv-tutorial-morphology

 2  0

Eveland_NSF_Outreach

 1  0
Repository for Outreach Activities

plantcv-stomata-tutorial

 1  2
interactive tutorial for analyzing microscopy images of stomata using PlantCV

plantcv-tasselyzer-tutorial

 1  3

plantcv-terra

 1  1
PlantCV scripts for analyzing data from the TERRA-REF project

plantcv-tutorial-germination

 1  1
Notebook for performing germination studies using plantCV

plantcv-tutorial-hyperspectral-smf-detection

 1  0

plantcv-tutorial-pollen-germination

 1  0

plantcv-tutorial-seeds

 1  0
seed workflow tutorial

plantcv-tutorial-threshold

 1  1
Tutorial for understanding Thresholding using PlantCV.

plantcv-tutorial-watershed

 1  0
watershed tutorial

UFMG-PlantCV-Workshop

 1  0

plantcv-stomata-tutorial-pcv4

 0  1
Tutorial for analyzing microscopy images of stomata using PlantCV version 4.0

reu

 0  1
National Science Foundation Research Experience for Undergraduates internship bioinformatics and phenotyping workshop materials

workshops

 0  1
Donald Danforth Plant Science Center Data Science workshops
Nextflow

bioinformatics

 4  5
The Donald Danforth Plant Science Center Bioinformatics Core Facility public repository
Python

plantcv

 632  259
Plant phenotyping with image analysis

htcondor-tools

 3  1
A collection of scripts for building and running HTCondor jobs and workflows

data-science-tools

 1  10
Data Science Tools

persistent_homology

 1  0
Persistent homology

plantcv-annotate

 1  0
add-on package for PlantCV annotation tools

plantcv-dev-scripts

 1  0
Development image analysis scripts

plantcv-geospatial

 1  1
Geospatial add-on package to PlantCV

plantcv-hyperspectral

 1  5
Hyperspectral analysis tools in PlantCV
R

pcvr

 3  0
R functions for use with plantCV output

brachypodium-heat-drought-paper

 2  0
PlantCV python scripts for image analysis; R scripts for data filtering, organizing, and analysis; shell scripts for SNP calling and population structure estimation; input data files for all analyses

diel-explorer

 1  1
Gehan Lab shiny app to graph JTK Cycle Output

FiReMAGE

 1  0

heritable-highCO2-response

 1  0

pgwasdbc

 1  0
R Package that handles and maintains a connection to GWAS database.

plantcvR

 1  1

quinoa-pollen-germination

 1  0

quinoa-trait

 1  0
Gehan Lab Shiny App to Explore Quinoa Phenotype Data

Bayesian_Growth

 0  1