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plantcv-setaria-molplant

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PlantCV image analysis scripts used in Fahlgren N, Feldman M, Gehan MA, Wilson MS, Shyu C, Bryant DW, et al. A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria. Mol Plant. 2015;8: 1520–1535.

plantcv-web

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PlantCV website repository
Java

PhenoFront

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LemnaTec front end.
Jupyter Notebook

plantcv-workshop

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PlantCV Workshops

plantcv-v2-paper

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PlantCV image analysis scripts used in the PlantCV v2.0 paper

apps-phenotyping

 3  1
The following are scripts and instruction necessary to set up 4 Raspberry Pi Powered Imaging Platforms

Eveland_NSF_Outreach

 1  0
Repository for Outreach Activities

phenome2020-workshop

 1  2
Phenome 2020 Digital Phenotyping workshop materials

plantcv-binder

 1  2
A repository for interactive PlantCV documentation using Binder

plantcv-terra

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PlantCV scripts for analyzing data from the TERRA-REF project

reu

 0  1
National Science Foundation Research Experience for Undergraduates internship bioinformatics and phenotyping workshop materials
Nextflow

bioinformatics

 4  4
The Donald Danforth Plant Science Center Bioinformatics Core Facility public repository
Python

plantcv

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Plant image analysis using OpenCV

htcondor-tools

 3  0
A collection of scripts for building and running HTCondor jobs and workflows

plantcv-seeds

 3  1
Seed phenotyping with PlantCV

data-science-tools

 1  9
Data Science Tools

plantcv-dev-scripts

 1  0
Development image analysis scripts

plantcv-hyperspectral

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Hyperspectral analysis tools in PlantCV
R

pgwasdbc

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R Package that handles and maintains a connection to GWAS database.

quinoa-trait

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Gehan Lab Shiny App to Explore Quinoa Phenotype Data

diel-explorer

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Gehan Lab shiny app to graph JTK Cycle Output

plantcvR

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