Ira Hall lab http://genome.wustl.edu/people/groups/detail/hall-lab/ 34 582 267 No Language cluster_intro 2 0 Hall Lab Computing 101 sv_paper_042020 2 1 supplementary data for abel et al paper C speedseq 288 107 A flexible framework for rapid genome analysis and interpretation lumpy-sv 0 1 lumpy: a general probabilistic framework for structural variant discovery soup 0 2 Catch-all for uncategorized or project-specific scripts 🍵 C++ fastqtl 3 9 Fork of FastQTL for SVs Jupyter Notebook assembly_validation 1 1 Python svtools 111 52 Tools for processing and analyzing structural variants. svtyper 96 49 Bayesian genotyper for structural variants gtex 16 9 GTEx analysis scripts long-read-validation 8 3 Long-read validation of BEDPE structural variation extract_sv_reads 4 0 Tool for extracting splitter or discordant reads from a BAM or CRAM file. 1kg_sv_comparison 3 1 cromwell-deployment 3 5 Scripts and configuration to setup a Cromwell deployment bamkit 2 4 Tools for common BAM file manipulations cshl_sv_2016 1 0 io 1 0 i/o tools lumpy-merge 1 0 old-laims 0 1 Shell protocols 2 0 Hall lab analysis protocols wdl sv-pipeline 34 19 Pipeline for structural variation detection in cohorts competitive-alignment 3 2 gatk4-germline-snv-pipeline 1 1 GATK4 pipeline for joint variant calling (SNP/INDELs)
