A flexible framework for rapid genome analysis and interpretation
lumpy: a general probabilistic framework for structural variant discovery
Catch-all for uncategorized or project-specific scripts 🍵
Tools for processing and analyzing structural variants.
Bayesian genotyper for structural variants
Long-read validation of BEDPE structural variation
Tool for extracting splitter or discordant reads from a BAM or CRAM file.
Scripts and configuration to setup a Cromwell deployment
Tools for common BAM file manipulations
CADD scripts release for offline scoring. For more information about CADD, please visit our website
Bioinformatics tool outputs converter to JSON or YAML
CSHL structural variation demo 2014
Local Assembly of Haplotypes
Examples for the Google Genomics Pipelines API.
Run 10X Genomics Software in Google Cloud Deployments
MatrixEQTL: Ultra fast eQTL analysis via large matrix operations
Hall lab analysis protocols
Pipeline for structural variation detection in cohorts
GATK4 pipeline for joint variant calling (SNP/INDELs)