Ira Hall lab http://genome.wustl.edu/people/groups/detail/hall-lab/ 34 558 250 No Language sv_paper_042020 2 1 supplementary data for abel et al paper cluster_intro 1 0 Hall Lab Computing 101 C speedseq 284 102 A flexible framework for rapid genome analysis and interpretation lumpy-sv 0 1 lumpy: a general probabilistic framework for structural variant discovery soup 0 2 Catch-all for uncategorized or project-specific scripts 🍵 C++ fastqtl 3 9 Fork of FastQTL for SVs Jupyter Notebook assembly_validation 1 1 Python svtools 103 47 Tools for processing and analyzing structural variants. svtyper 91 48 Bayesian genotyper for structural variants gtex 16 9 GTEx analysis scripts long-read-validation 8 3 Long-read validation of BEDPE structural variation cromwell-deployment 4 4 Scripts and configuration to setup a Cromwell deployment extract_sv_reads 4 0 Tool for extracting splitter or discordant reads from a BAM or CRAM file. 1kg_sv_comparison 3 1 bamkit 1 4 Tools for common BAM file manipulations cshl_sv_2016 1 0 io 1 0 i/o tools old-laims 0 1 Shell protocols 1 0 Hall lab analysis protocols wdl sv-pipeline 30 14 Pipeline for structural variation detection in cohorts competitive-alignment 3 2 gatk4-germline-snv-pipeline 1 1 GATK4 pipeline for joint variant calling (SNP/INDELs)
