### 395 R users in St. Louis

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Joshua Ulrich has

**1,524**from R repos:theHumanBorch has

**513**from R repos:- scRepertoire
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**279**) A toolkit for single-cell immune profiling - escape
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**102**) Easy single cell analysis platform for enrichment - utility
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**75**) Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR

Kevin Blake, PhD has

**216**from R repos:- NatParksPalettes
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**216**) Color palette package inspired by National Parks - ConPosER
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**0**) Identify conserved positions in amino acid multiple sequence alignments in R - GrowthRateR
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**0**) Calculate bacterial growth rates from plate reader kinetics data in R

Chris Miller has

**215**from R repos:Chris Prener has

**159**from R repos:Ha X. Dang has

**139**from R repos:The McDonnell Genome Institute has

**129**from R repos:- sciclone
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**113**) An R package for inferring the subclonal architecture of tumors - sciclone-meta
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**6**) accessory scripts and documentation related to the sciclone R package at genome/sciclone - docker-rnaseq
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**4**) A fat docker image for running RnaSeq

SLU Data Science Seminar openGIS Project has

**104**from R repos:- postmastr
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**37**) R package for Processing and Parsing Untidy Street Addresses - tidyseg
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**13**) R package with tidy approaches for calculating measures of segregation - covid_daily_viz_archive
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**9**) Daily tracking of Missouri COVID Data

Li Ding's Lab has

**78**from R repos:- PanCanAtlasGermline
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**41**) (No description) - cptac_methylation
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**7**) Methylation array analysis pipeline for CPTAC - ccRCC_snRNA_analysis
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**6**) (No description)

Ben Mansfeld has

**64**from R repos:- QTLseqr
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**63**) QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis - CMD2_project
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**1**) Scripts for genetic mapping of CMD2 locus and RNAseq for the CMD2 project - drat
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**0**) Drat R Archive Template

Ryan J. Price has

**62**from R repos:Obi Griffith has

**59**from R repos:- biostar-tutorials
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**49**) Code for biostar tutorials - mostly R and Perl - Rtoolbox
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**8**) Modeling precision treatment of breast cancer - analysis-projects-R
(
**1**) (No description)

Christopher Lucas has

**49**from R repos:- translateR
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**19**) R Package for Cross-Language Topic Modeling - MatchingFrontier
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**18**) Optimal pruning for imbalance minimization in causal inference - transcribeR
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**10**) R Package for Automated Speech Recognition

Austin F. Frank has

**36**from R repos:Haojia Wu has

**34**from R repos:- plot1cell
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**33**) A R package for advanced single cell data viz - Mouse_DKD_Rx_Atlas
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**1**) (No description) - Bulk_RNAseq_analysis_pipeline
(
**0**) (No description)

Keith Lohse has

**33**from R repos:- LMER_Clinical_Science
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**15**) Linear Mixed Effect Regression for Clinical Scientists - ReproRehab
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**5**) R programming exercises for learners enrolled in ReproRehab - LMER_v_RM_ANOVA
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**4**) Comparison of linear mixed-effect regression to repeated-measures analysis of variance for dealing with longitudinal data

Tae-Hyuk Ahn, Ph.D. has

**23**from R repos:Scott Lewis has

**21**from R repos:- ExpressionDB
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**17**) App for hosting gene expression/ontology data with Shiny - Circa-in-Silico
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**2**) Application for generating "in silico" circadian rhythms - RStartHere
(
**1**) A guide to some of the most useful R Packages that we know about

Tychele Turner has

**19**from R repos:- plot-protein
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**6**) Plot Protein: Visualization of Mutations - plot-protein-with-conservation
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**4**) Plot Protein: Visualization of Mutations with Conservation - ElGenomaPequeno
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**4**) El genoma pequeño - analysis workflow for "the little genome"

Nathaniel G. Mahieu has

**17**from R repos:- mz.unity
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**14**) mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data - warpgroup
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**3**) The warpgroup algorithm takes multiple LC/MS samples and determines: 1. Segregation of those peaks into compound groups; 2. Per-group consensus integration bounds; 3. Integration bounds for samples in which no peak was detected. - enrich.no12c
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**0**) Proof of concept untargeted enrichment detection

Branson Fox has

**16**from R repos:- hl7r
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**8**) An HL7 Parser for R - stlvacancy
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**5**) A reproducible dataset for estimating vacancy in the City of St. Louis - stlapi
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**1**) A REST API for Various St Louis Data

Brent Lab has

**14**from R repos:- NetProphet_2.0
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**12**) A “data light” TF-network mapping algorithm using only gene expression and genome sequence data. - NetProphet_3.0
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**2**) (No description) - yeastCCDBShiny
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**0**) Shiny front end to yeastCallingCardsDB

The McDonnell Genome Institute has

**14**from R repos:- CummeRbund
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**2**) Unofficial repo for software vendoring or packaging purposes - r-cran-ggplot2
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**2**) Unofficial repo for software vendoring or packaging purposes - r-cran-pbh5
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**1**) Unofficial repo for software vendoring or packaging purposes

Donald Danforth Plant Science Center has

**12**from R repos:- pcvr
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**3**) R functions for use with plantCV output - brachypodium-heat-drought-paper
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**2**) PlantCV python scripts for image analysis; R scripts for data filtering, organizing, and analysis; shell scripts for SNP calling and population structure estimation; input data files for all analyses - FiReMAGE
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**1**) (No description)

Christina Del Azodi has

**11**from R repos:- GenomicPrediction_2018
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**11**) Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy - CompBio_Bootcamp
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**0**) Materials for mini-workshops on learning to code for computational biology/bioinformatics. - Biotech_Survey
(
**0**) Code for survey analysis regarding public opinion on biotechnology

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