R

267 R users in St. Louis

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Joshua Ulrich has 1,175 from R repos:
  • quantmod (596 ) Quantitative Financial Modelling Framework
  • TTR (245 ) Technical analysis and other functions to construct technical trading rules with R
  • xts (191 ) Extensible time series class that provides uniform handling of many R time series classes by extending zoo.
SLU Data Science Seminar openGIS Project has 177 from R repos:
  • biscale (68 ) Bivariate Mapping with ggplot2
  • postmastr (28 ) R package for Processing and Parsing Untidy Street Addresses
  • qualmap (12 ) R package for working with semi-structured qualitative GIS data
Chris Miller has 166 from R repos:
  • fishplot (125 ) Create timecourse "fish plots" that show changes in the clonal architecture of tumors
  • readDepth (24 ) R package for inferring copy number from read depth
  • copyCat (16 ) a parallel R package for detecting copy-number alterations from short sequencing reads
The McDonnell Genome Institute has 106 from R repos:
  • sciclone (91 ) An R package for inferring the subclonal architecture of tumors
  • sciclone-meta (6 ) accessory scripts and documentation related to the sciclone R package at genome/sciclone
  • docker-rnaseq (4 ) A fat docker image for running RnaSeq
Ha X. Dang has 105 from R repos:
  • clonevol (104 ) Inferring and visualizing clonal evolution in multi-sample cancer sequencing
  • trees (1 ) Simulate and plot trees in R
  • StructuralVariantAnnotation (0 ) R package designed to simplify structural variant analysis
theHumanBorch has 95 from R repos:
  • scRepertoire (74 ) A toolkit for single-cell immune profiling
  • escape (20 ) Easy single cell analysis platform for enrichment
  • aRt (1 ) Making art using R
Ryan J. Price has 57 from R repos:
  • loggit (31 ) Modern Logging for the R Ecosystem
  • readit (25 ) [RETIRED] Effortlessly Read Any Rectangular Data Into R
  • stl_rug (1 ) Materials for STL R User Group presentations
Li Ding's Lab has 48 from R repos:
Ben Mansfeld has 46 from R repos:
  • QTLseqr (46 ) QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
  • drat (0 ) Drat R Archive Template
Christopher Lucas has 44 from R repos:
  • MatchingFrontier (18 ) Optimal pruning for imbalance minimization in causal inference
  • translateR (15 ) R Package for Cross-Language Topic Modeling
  • transcribeR (9 ) R Package for Automated Speech Recognition
Austin F. Frank has 34 from R repos:
  • R-hacks (31 ) useful bits of code for programming and analysis in R
  • bgm-jags (3 ) Using JAGS to re-implement examples and problems from Lee and Wagenmaker's "Bayesian Graphical Modeling"
Nathaniel G. Mahieu has 16 from R repos:
  • mz.unity (13 ) mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data
  • warpgroup (3 ) The warpgroup algorithm takes multiple LC/MS samples and determines: 1. Segregation of those peaks into compound groups; 2. Per-group consensus integration bounds; 3. Integration bounds for samples in which no peak was detected.
  • ExData_Plotting1 (0 ) Plotting Assignment 1 for Exploratory Data Analysis
Scott Lewis has 15 from R repos:
  • ExpressionDB (14 ) App for hosting gene expression/ontology data with Shiny
  • Circa-in-Silico (1 ) Application for generating "in silico" circadian rhythms
  • CKDapp (0 ) chronic kidney disease data set
Tae-Hyuk Ahn has 15 from R repos:
  • LONGO (6 ) Gene Length-Dependent Expression Analysis Tool in Neuronal Cells
  • iCAT (5 ) iCAT: Immune Cells Analysis software Tool
  • MegaR (4 ) megaR: An Interactive R Package for Metagenomic Sample Classification and Disease Prediction using Microbiota and Machine Learning
The McDonnell Genome Institute has 14 from R repos:
  • r-cran-ggplot2 (2 ) Unofficial repo for software vendoring or packaging purposes
  • CummeRbund (2 ) Unofficial repo for software vendoring or packaging purposes
  • r-cran-reshape2 (1 ) Unofficial repo for software vendoring or packaging purposes
Branson Fox has 11 from R repos:
  • stlvacancy (5 ) A reproducible dataset for estimating vacancy in the City of St. Louis
  • hl7r (3 ) An HL7 Parser for R
  • stlapi (1 ) A REST API for Various St Louis Data
Brent Lab has 11 from R repos:
  • NetProphet_2.0 (11 ) A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.
Mariana P Braga has 9 from R repos:
  • pieridae_hostrep (6 ) Analysis of host repertoire evolution in Pieridae butterflies
  • evolnets (3 ) R package to reconstruct ancestral networks inferred with RevBayes
Open STL has 8 from R repos:
  • health-hack-weekend (8 ) Data, resources, & wiki for OpenSTL Health Hack Weekend 1/16/2015-1/19/2015
  • stldata (0 ) R package containg St. Louis related datasets for teaching
Bruno Vilela de Moraes e Silva has 7 from R repos:
  • letsR (6 ) Package letsR
  • sampler (1 ) Functions to generate overdispersed and aggregated sampling designs in the geographic, phylogenetic or any trait/variable space.
  • NUPEX (0 ) What the Package Does (One Line, Title Case)
Keith Lohse has 7 from R repos:
  • difficulty_EEG (2 ) Motor learning study in which participants had self-control of difficulty during practice. The study is devided into analyses focus on learning and analyses focused on participants behavior during practice.
  • cat_learn (2 ) Category Learning Experiment and Simulations
  • LMER_Clinical_Science (2 ) Linear Mixed Effect Regression for Clinical Scientists
Tychele Turner has 7 from R repos:
Colby Chiang has 6 from R repos:
  • cnvgram (4 ) Draw CNV diagrams
  • voir (2 ) Tools for graphically viewing data
Jared Andrews has 6 from R repos:
  • EZscRNA (3 ) Convenient, high-level functions for EZ(-er) scRNA-seq analysis
  • OneLinerOmics (3 ) One liner analyses and visualizations for bulk RNA-seq and ChIP-seq data
  • SingleR (0 ) Clone of the Bioconductor repository for the SingleR package.
Shane Caldwell has 6 from R repos:
  • shinyLimma (6 ) Extends Limma into a web-app GUI that allows non-programmers to utilize differential expression analysis in their research.
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