383 R users in St. Louis
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Joshua Ulrich has 1,458 from R repos:
theHumanBorch has 439 from R repos:
- scRepertoire (240 ) A toolkit for single-cell immune profiling
- escape (85 ) Easy single cell analysis platform for enrichment
- utility (71 ) Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
Chris Miller has 207 from R repos:
Kevin Blake has 207 from R repos:
- NatParksPalettes (207 ) Color palette package inspired by National Parks
- PathotypeR (0 ) E. coli DEC pathotype assignment in R
- ConPosER (0 ) Identify conserved positions in amino acid multiple sequence alignments in R
Chris Prener has 157 from R repos:
Ha X. Dang has 134 from R repos:
The McDonnell Genome Institute has 124 from R repos:
- sciclone (108 ) An R package for inferring the subclonal architecture of tumors
- sciclone-meta (6 ) accessory scripts and documentation related to the sciclone R package at genome/sciclone
- bmm (4 ) R package that uses a variational Bayesian approach to fitting a mixture of Beta distributions
SLU Data Science Seminar openGIS Project has 108 from R repos:
- postmastr (38 ) R package for Processing and Parsing Untidy Street Addresses
- tidyseg (12 ) R package with tidy approaches for calculating measures of segregation
- covid_daily_viz_archive (9 ) Daily tracking of Missouri COVID Data
Li Ding's Lab has 73 from R repos:
- PanCanAtlasGermline (40 ) (No description)
- cptac_methylation (6 ) Methylation array analysis pipeline for CPTAC
- gatk4wxscnv (5 ) Pipeline for WXS CNV using GATK4
Ryan J. Price has 62 from R repos:
Ben Mansfeld has 60 from R repos:
- QTLseqr (59 ) QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
- CMD2_project (1 ) Scripts for genetic mapping of CMD2 locus and RNAseq for the CMD2 project
- mfusca_figs (0 ) Malus
Obi Griffith has 60 from R repos:
- biostar-tutorials (50 ) Code for biostar tutorials - mostly R and Perl
- Rtoolbox (8 ) Modeling precision treatment of breast cancer
- RFRS (1 ) Random Forests Relapse Score
Christopher Lucas has 49 from R repos:
- translateR (19 ) R Package for Cross-Language Topic Modeling
- MatchingFrontier (18 ) Optimal pruning for imbalance minimization in causal inference
- transcribeR (10 ) R Package for Automated Speech Recognition
Austin F. Frank has 36 from R repos:
Haojia Wu has 29 from R repos:
- plot1cell (28 ) A R package for advanced single cell data viz
- Mouse_DKD_Rx_Atlas (1 ) (No description)
- Bulk_RNAseq_analysis_pipeline (0 ) (No description)
Keith Lohse has 27 from R repos:
- LMER_Clinical_Science (12 ) Linear Mixed Effect Regression for Clinical Scientists
- ReproRehab (4 ) R programming exercises for learners enrolled in ReproRehab
- LMER_v_RM_ANOVA (3 ) Comparison of linear mixed-effect regression to repeated-measures analysis of variance for dealing with longitudinal data
Tae-Hyuk Ahn, Ph.D. has 24 from R repos:
Scott Lewis has 20 from R repos:
- ExpressionDB (16 ) App for hosting gene expression/ontology data with Shiny
- Circa-in-Silico (2 ) Application for generating "in silico" circadian rhythms
- CKDapp (1 ) chronic kidney disease data set
Nathaniel G. Mahieu has 17 from R repos:
- mz.unity (14 ) mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data
- warpgroup (3 ) The warpgroup algorithm takes multiple LC/MS samples and determines: 1. Segregation of those peaks into compound groups; 2. Per-group consensus integration bounds; 3. Integration bounds for samples in which no peak was detected.
- enrich.no12c (0 ) Proof of concept untargeted enrichment detection
Brent Lab has 14 from R repos:
- NetProphet_2.0 (12 ) A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.
- NetProphet_3.0 (2 ) (No description)
- brentlabRnaSeqTools (0 ) (No description)
The McDonnell Genome Institute has 14 from R repos:
- r-cran-ggplot2 (2 ) Unofficial repo for software vendoring or packaging purposes
- CummeRbund (2 ) Unofficial repo for software vendoring or packaging purposes
- r-cran-labeling (1 ) Unofficial repo for software vendoring or packaging purposes
Branson Fox has 13 from R repos:
- hl7r (5 ) An HL7 Parser for R
- stlvacancy (5 ) A reproducible dataset for estimating vacancy in the City of St. Louis
- dashboard (1 ) St. Louis Crime Dashboard
Margi Sant has 10 from R repos:
- Telecommunications-Customer-Attrition-Dashboard (7 ) A dynamic dashboard for a telecommunications company to analyze customer attrition rates according to demographic filters.
- Data-Mining-R-Bremen-Challenge (1 ) Create_data_SD iterates csv files containing sensor data for a movement. It extracts 3 standard deviations for each sensor. Then, combines the train_data and features in sd_training_data.csv to be used to build classification models. Create_Test_SD combines challenge.csv and sd features in the sd_testing_data.csv. Sensor files download on website
- Cross-Validation-Random-Forest (1 ) Using k-Fold Cross Validation to find Optimal number of trees
Tychele Turner has 10 from R repos:
- plot-protein (5 ) Plot Protein: Visualization of Mutations
- plot-protein-with-conservation (3 ) Plot Protein: Visualization of Mutations with Conservation
- ElGenomaPequeno (2 ) El genoma pequeño - analysis workflow for "the little genome"
Christina Del Azodi has 9 from R repos:
- GenomicPrediction_2018 (9 ) Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy
- CompBio_Bootcamp (0 ) Materials for mini-workshops on learning to code for computational biology/bioinformatics.
- Biotech_Survey (0 ) Code for survey analysis regarding public opinion on biotechnology
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