### 428 R users in St. Louis

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Joshua Ulrich has

**1,605**from R repos:theHumanBorch has

**619**from R repos:- scRepertoire
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**307**) A toolkit for single-cell immune profiling - escape
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**146**) Easy single cell analysis platform for enrichment - utility
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**84**) Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR

Kevin Blake, PhD has

**237**from R repos:- NatParksPalettes
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**235**) Color palette package inspired by National Parks - ConPosER
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**2**) Identify conserved positions in amino acid multiple sequence alignments in R - GrowthRateR
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**0**) Calculate bacterial growth rates from plate reader kinetics data in R

Chris Miller has

**220**from R repos:Chris Prener has

**159**from R repos:Ha X. Dang has

**144**from R repos:The McDonnell Genome Institute has

**133**from R repos:- sciclone
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**115**) An R package for inferring the subclonal architecture of tumors - sciclone-meta
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**8**) accessory scripts and documentation related to the sciclone R package at genome/sciclone - bmm
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**4**) R package that uses a variational Bayesian approach to fitting a mixture of Beta distributions

SLU Data Science Seminar openGIS Project has

**106**from R repos:- postmastr
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**37**) R package for Processing and Parsing Untidy Street Addresses - tidyseg
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**13**) R package with tidy approaches for calculating measures of segregation - covid_daily_viz_archive
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**9**) Daily tracking of Missouri COVID Data

Li Ding's Lab has

**86**from R repos:- PanCanAtlasGermline
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**42**) (No description) - cptac_methylation
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**7**) Methylation array analysis pipeline for CPTAC - ccRCC_snRNA_analysis
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**6**) (No description)

Ben Mansfeld has

**67**from R repos:- QTLseqr
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**65**) QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis - mfusca_figs
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**1**) Malus - CMD2_project
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**1**) Scripts for genetic mapping of CMD2 locus and RNAseq for the CMD2 project

Ryan J. Price has

**62**from R repos:Obi Griffith has

**59**from R repos:- biostar-tutorials
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**49**) Code for biostar tutorials - mostly R and Perl - Rtoolbox
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**8**) Modeling precision treatment of breast cancer - analysis-projects-R
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**1**) (No description)

Christopher Lucas has

**50**from R repos:- translateR
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**20**) R Package for Cross-Language Topic Modeling - MatchingFrontier
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**18**) Optimal pruning for imbalance minimization in causal inference - transcribeR
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**10**) R Package for Automated Speech Recognition

Keith Lohse has

**40**from R repos:- LMER_Clinical_Science
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**19**) Linear Mixed Effect Regression for Clinical Scientists - ReproRehab
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**6**) R programming exercises for learners enrolled in ReproRehab - LMER_v_RM_ANOVA
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**4**) Comparison of linear mixed-effect regression to repeated-measures analysis of variance for dealing with longitudinal data

Haojia Wu has

**37**from R repos:- plot1cell
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**36**) A R package for advanced single cell data viz - Mouse_DKD_Rx_Atlas
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**1**) (No description) - Bulk_RNAseq_analysis_pipeline
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**0**) (No description)

Austin F. Frank has

**36**from R repos:Tae-Hyuk Ahn, Ph.D. has

**24**from R repos:Scott Lewis has

**21**from R repos:- ExpressionDB
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**17**) App for hosting gene expression/ontology data with Shiny - Circa-in-Silico
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**2**) Application for generating "in silico" circadian rhythms - CKDapp
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**1**) chronic kidney disease data set

Tychele Turner has

**20**from R repos:- plot-protein
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**6**) Plot Protein: Visualization of Mutations - ElGenomaPequeno
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**5**) El genoma pequeño - analysis workflow for "the little genome." This repository holds a computational workflow to analyze the mitochondrial genome. - plot-protein-with-conservation
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**4**) Plot Protein: Visualization of Mutations with Conservation

Nathaniel G. Mahieu has

**17**from R repos:- mz.unity
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**14**) mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data - warpgroup
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**3**) The warpgroup algorithm takes multiple LC/MS samples and determines: 1. Segregation of those peaks into compound groups; 2. Per-group consensus integration bounds; 3. Integration bounds for samples in which no peak was detected. - enrich.no12c
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**0**) Proof of concept untargeted enrichment detection

Branson Fox has

**16**from R repos:- hl7r
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**8**) An HL7 Parser for R - stlvacancy
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**5**) A reproducible dataset for estimating vacancy in the City of St. Louis - stlapi
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**1**) A REST API for Various St Louis Data

Brent Lab has

**15**from R repos:- NetProphet_2.0
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**12**) A “data light” TF-network mapping algorithm using only gene expression and genome sequence data. - NetProphet_3.0
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**2**) (No description) - GOeval
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**1**) Gene Regulatory Network Evaluation Using Gene Ontology

Donald Danforth Plant Science Center has

**14**from R repos:- pcvr
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**4**) R functions for use with plantCV output - brachypodium-heat-drought-paper
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**2**) PlantCV python scripts for image analysis; R scripts for data filtering, organizing, and analysis; shell scripts for SNP calling and population structure estimation; input data files for all analyses - plantcvR
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**1**) (No description)

The McDonnell Genome Institute has

**14**from R repos:- r-cran-ggplot2
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**2**) Unofficial repo for software vendoring or packaging purposes - CummeRbund
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**2**) Unofficial repo for software vendoring or packaging purposes - r-cran-pbh5
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**1**) Unofficial repo for software vendoring or packaging purposes

Margi Sant has

**13**from R repos:- Telecommunications-Customer-Attrition-Dashboard
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**9**) A dynamic dashboard for a telecommunications company to analyze customer attrition rates according to demographic filters. - Cross-Validation-Random-Forest
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**1**) Using k-Fold Cross Validation to find Optimal number of trees - Data-Mining-R-Bremen-Challenge
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**1**) Create_data_SD iterates csv files containing sensor data for a movement. It extracts 3 standard deviations for each sensor. Then, combines the train_data and features in sd_training_data.csv to be used to build classification models. Create_Test_SD combines challenge.csv and sd features in the sd_testing_data.csv. Sensor files download on website

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