395 R users in St. Louis
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Joshua Ulrich has 1,524 from R repos:
theHumanBorch has 513 from R repos:
- scRepertoire (279 ) A toolkit for single-cell immune profiling
- escape (102 ) Easy single cell analysis platform for enrichment
- utility (75 ) Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
Kevin Blake, PhD has 216 from R repos:
- NatParksPalettes (216 ) Color palette package inspired by National Parks
- ConPosER (0 ) Identify conserved positions in amino acid multiple sequence alignments in R
- GrowthRateR (0 ) Calculate bacterial growth rates from plate reader kinetics data in R
Chris Miller has 215 from R repos:
Chris Prener has 159 from R repos:
Ha X. Dang has 139 from R repos:
The McDonnell Genome Institute has 129 from R repos:
- sciclone (113 ) An R package for inferring the subclonal architecture of tumors
- sciclone-meta (6 ) accessory scripts and documentation related to the sciclone R package at genome/sciclone
- docker-rnaseq (4 ) A fat docker image for running RnaSeq
SLU Data Science Seminar openGIS Project has 104 from R repos:
- postmastr (37 ) R package for Processing and Parsing Untidy Street Addresses
- tidyseg (13 ) R package with tidy approaches for calculating measures of segregation
- covid_daily_viz_archive (9 ) Daily tracking of Missouri COVID Data
Li Ding's Lab has 78 from R repos:
- PanCanAtlasGermline (41 ) (No description)
- cptac_methylation (7 ) Methylation array analysis pipeline for CPTAC
- ccRCC_snRNA_analysis (6 ) (No description)
Ben Mansfeld has 64 from R repos:
- QTLseqr (63 ) QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
- CMD2_project (1 ) Scripts for genetic mapping of CMD2 locus and RNAseq for the CMD2 project
- drat (0 ) Drat R Archive Template
Ryan J. Price has 62 from R repos:
Obi Griffith has 59 from R repos:
- biostar-tutorials (49 ) Code for biostar tutorials - mostly R and Perl
- Rtoolbox (8 ) Modeling precision treatment of breast cancer
- analysis-projects-R (1 ) (No description)
Christopher Lucas has 49 from R repos:
- translateR (19 ) R Package for Cross-Language Topic Modeling
- MatchingFrontier (18 ) Optimal pruning for imbalance minimization in causal inference
- transcribeR (10 ) R Package for Automated Speech Recognition
Austin F. Frank has 36 from R repos:
Haojia Wu has 34 from R repos:
- plot1cell (33 ) A R package for advanced single cell data viz
- Mouse_DKD_Rx_Atlas (1 ) (No description)
- Bulk_RNAseq_analysis_pipeline (0 ) (No description)
Keith Lohse has 33 from R repos:
- LMER_Clinical_Science (15 ) Linear Mixed Effect Regression for Clinical Scientists
- ReproRehab (5 ) R programming exercises for learners enrolled in ReproRehab
- LMER_v_RM_ANOVA (4 ) Comparison of linear mixed-effect regression to repeated-measures analysis of variance for dealing with longitudinal data
Tae-Hyuk Ahn, Ph.D. has 23 from R repos:
Scott Lewis has 21 from R repos:
- ExpressionDB (17 ) App for hosting gene expression/ontology data with Shiny
- Circa-in-Silico (2 ) Application for generating "in silico" circadian rhythms
- RStartHere (1 ) A guide to some of the most useful R Packages that we know about
Tychele Turner has 19 from R repos:
- plot-protein (6 ) Plot Protein: Visualization of Mutations
- plot-protein-with-conservation (4 ) Plot Protein: Visualization of Mutations with Conservation
- ElGenomaPequeno (4 ) El genoma pequeño - analysis workflow for "the little genome"
Nathaniel G. Mahieu has 17 from R repos:
- mz.unity (14 ) mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data
- warpgroup (3 ) The warpgroup algorithm takes multiple LC/MS samples and determines: 1. Segregation of those peaks into compound groups; 2. Per-group consensus integration bounds; 3. Integration bounds for samples in which no peak was detected.
- enrich.no12c (0 ) Proof of concept untargeted enrichment detection
Branson Fox has 16 from R repos:
- hl7r (8 ) An HL7 Parser for R
- stlvacancy (5 ) A reproducible dataset for estimating vacancy in the City of St. Louis
- stlapi (1 ) A REST API for Various St Louis Data
Brent Lab has 14 from R repos:
- NetProphet_2.0 (12 ) A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.
- NetProphet_3.0 (2 ) (No description)
- yeastCCDBShiny (0 ) Shiny front end to yeastCallingCardsDB
The McDonnell Genome Institute has 14 from R repos:
- CummeRbund (2 ) Unofficial repo for software vendoring or packaging purposes
- r-cran-ggplot2 (2 ) Unofficial repo for software vendoring or packaging purposes
- r-cran-pbh5 (1 ) Unofficial repo for software vendoring or packaging purposes
Donald Danforth Plant Science Center has 12 from R repos:
- pcvr (3 ) R functions for use with plantCV output
- brachypodium-heat-drought-paper (2 ) PlantCV python scripts for image analysis; R scripts for data filtering, organizing, and analysis; shell scripts for SNP calling and population structure estimation; input data files for all analyses
- FiReMAGE (1 ) (No description)
Christina Del Azodi has 11 from R repos:
- GenomicPrediction_2018 (11 ) Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy
- CompBio_Bootcamp (0 ) Materials for mini-workshops on learning to code for computational biology/bioinformatics.
- Biotech_Survey (0 ) Code for survey analysis regarding public opinion on biotechnology
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