### 364 R users in St. Louis

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Joshua Ulrich has

**1,377**from R repos:theHumanBorch has

**386**from R repos:- scRepertoire
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**212**) A toolkit for single-cell immune profiling - escape
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**81**) Easy single cell analysis platform for enrichment - utility
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**65**) Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR

Chris Miller has

**200**from R repos:Kevin Blake has

**193**from R repos:- NatParksPalettes
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**193**) Color palette package inspired by National Parks. - PathotypeR
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**0**) DEC pathotype assignment of E. coli genomes in R. - India-HWW_MicrobiolSpectr-2023
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**0**) Data, code, and analyses for Talat & Blake et al. (2023). Microbiology Spectrum. PMID: 36786639.

Chris Prener has

**147**from R repos:Ha X. Dang has

**127**from R repos:The McDonnell Genome Institute has

**119**from R repos:- sciclone
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**103**) An R package for inferring the subclonal architecture of tumors - sciclone-meta
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**6**) accessory scripts and documentation related to the sciclone R package at genome/sciclone - bmm
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**4**) R package that uses a variational Bayesian approach to fitting a mixture of Beta distributions

SLU Data Science Seminar openGIS Project has

**104**from R repos:- postmastr
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**35**) R package for Processing and Parsing Untidy Street Addresses - tidyseg
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**12**) R package with tidy approaches for calculating measures of segregation - covid_daily_viz_archive
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**9**) Daily tracking of Missouri COVID Data

Li Ding's Lab has

**68**from R repos:- PanCanAtlasGermline
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**40**) (No description) - gatk4wxscnv
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**5**) Pipeline for WXS CNV using GATK4 - griffin-fusion
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**4**) Suite of fusion gene analysis tools

Ryan J. Price has

**61**from R repos:Obi Griffith has

**57**from R repos:- biostar-tutorials
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**48**) Code for biostar tutorials - mostly R and Perl - Rtoolbox
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**7**) Modeling precision treatment of breast cancer - RFRS
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**1**) Random Forests Relapse Score

Ben Mansfeld has

**56**from R repos:- QTLseqr
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**55**) QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis - CMD2_project
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**1**) Scripts for genetic mapping of CMD2 locus and RNAseq for the CMD2 project - drat
(
**0**) Drat R Archive Template

Christopher Lucas has

**49**from R repos:- translateR
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**19**) R Package for Cross-Language Topic Modeling - MatchingFrontier
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**18**) Optimal pruning for imbalance minimization in causal inference - transcribeR
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**10**) R Package for Automated Speech Recognition

Austin F. Frank has

**36**from R repos:Tae-Hyuk Ahn, Ph.D. has

**23**from R repos:Keith Lohse has

**22**from R repos:- LMER_Clinical_Science
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**9**) Linear Mixed Effect Regression for Clinical Scientists - LMER_v_RM_ANOVA
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**3**) Comparison of linear mixed-effect regression to repeated-measures analysis of variance for dealing with longitudinal data - ReproRehab
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**3**) R programming exercises for learners enrolled in ReproRehab

Scott Lewis has

**21**from R repos:- ExpressionDB
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**17**) App for hosting gene expression/ontology data with Shiny - Circa-in-Silico
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**2**) Application for generating "in silico" circadian rhythms - CKDapp
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**1**) chronic kidney disease data set

Haojia Wu has

**18**from R repos:- plot1cell
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**17**) A R package for advanced single cell data viz - Mouse_DKD_Rx_Atlas
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**1**) (No description) - qPCR-processing
(
**0**) (No description)

Nathaniel G. Mahieu has

**17**from R repos:- mz.unity
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**14**) mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data - warpgroup
(
**3**) The warpgroup algorithm takes multiple LC/MS samples and determines: 1. Segregation of those peaks into compound groups; 2. Per-group consensus integration bounds; 3. Integration bounds for samples in which no peak was detected. - ExData_Plotting1
(
**0**) Plotting Assignment 1 for Exploratory Data Analysis

Brent Lab has

**14**from R repos:- NetProphet_2.0
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**12**) A “data light” TF-network mapping algorithm using only gene expression and genome sequence data. - NetProphet_3.0
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**2**) (No description) - brentlabRnaSeqTools
(
**0**) (No description)

The McDonnell Genome Institute has

**14**from R repos:- CummeRbund
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**2**) Unofficial repo for software vendoring or packaging purposes - r-cran-ggplot2
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**2**) Unofficial repo for software vendoring or packaging purposes - r-cran-mixdist
(
**1**) Unofficial repo for software vendoring or packaging purposes

Branson Fox has

**13**from R repos:- hl7r
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**5**) An HL7 Parser for R - stlvacancy
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**5**) A reproducible dataset for estimating vacancy in the City of St. Louis - stlapi
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**1**) A REST API for Various St Louis Data

Christina Del Azodi has

**9**from R repos:- GenomicPrediction_2018
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**9**) Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy - Biotech_Survey
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**0**) Code for survey analysis regarding public opinion on biotechnology - CompBio_Bootcamp
(
**0**) Materials for mini-workshops on learning to code for computational biology/bioinformatics.

Mariana P Braga has

**9**from R repos:- pieridae_hostrep
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**6**) Analysis of host repertoire evolution in Pieridae butterflies - evolnets
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**3**) R package to reconstruct ancestral networks inferred with RevBayes

Tychele Turner has

**9**from R repos:- plot-protein
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**4**) Plot Protein: Visualization of Mutations - plot-protein-with-conservation
(
**3**) Plot Protein: Visualization of Mutations with Conservation - ElGenomaPequeno
(
**2**) El genoma pequeño - analysis workflow for "the little genome"

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