### 267 R users in St. Louis

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Joshua Ulrich has

**1,175**from R repos:SLU Data Science Seminar openGIS Project has

**177**from R repos:Chris Miller has

**166**from R repos:The McDonnell Genome Institute has

**106**from R repos:- sciclone
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**91**) An R package for inferring the subclonal architecture of tumors - sciclone-meta
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**6**) accessory scripts and documentation related to the sciclone R package at genome/sciclone - docker-rnaseq
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**4**) A fat docker image for running RnaSeq

Ha X. Dang has

**105**from R repos:- clonevol
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**104**) Inferring and visualizing clonal evolution in multi-sample cancer sequencing - trees
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**1**) Simulate and plot trees in R - StructuralVariantAnnotation
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**0**) R package designed to simplify structural variant analysis

theHumanBorch has

**95**from R repos:- scRepertoire
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**74**) A toolkit for single-cell immune profiling - escape
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**20**) Easy single cell analysis platform for enrichment - aRt
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**1**) Making art using R

Ryan J. Price has

**57**from R repos:Li Ding's Lab has

**48**from R repos:- PanCanAtlasGermline
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**30**) (No description) - gatk4wxscnv
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**5**) Pipeline for WXS CNV using GATK4 - griffin-fusion
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**3**) Suite of fusion gene analysis tools

Ben Mansfeld has

**46**from R repos:Christopher Lucas has

**44**from R repos:- MatchingFrontier
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**18**) Optimal pruning for imbalance minimization in causal inference - translateR
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**15**) R Package for Cross-Language Topic Modeling - transcribeR
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**9**) R Package for Automated Speech Recognition

Austin F. Frank has

**34**from R repos:Nathaniel G. Mahieu has

**16**from R repos:- mz.unity
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**13**) mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data - warpgroup
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**3**) The warpgroup algorithm takes multiple LC/MS samples and determines: 1. Segregation of those peaks into compound groups; 2. Per-group consensus integration bounds; 3. Integration bounds for samples in which no peak was detected. - ExData_Plotting1
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**0**) Plotting Assignment 1 for Exploratory Data Analysis

Scott Lewis has

**15**from R repos:- ExpressionDB
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**14**) App for hosting gene expression/ontology data with Shiny - Circa-in-Silico
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**1**) Application for generating "in silico" circadian rhythms - CKDapp
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**0**) chronic kidney disease data set

Tae-Hyuk Ahn has

**15**from R repos:The McDonnell Genome Institute has

**14**from R repos:- r-cran-ggplot2
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**2**) Unofficial repo for software vendoring or packaging purposes - CummeRbund
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**2**) Unofficial repo for software vendoring or packaging purposes - r-cran-reshape2
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**1**) Unofficial repo for software vendoring or packaging purposes

Branson Fox has

**11**from R repos:- stlvacancy
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**5**) A reproducible dataset for estimating vacancy in the City of St. Louis - hl7r
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**3**) An HL7 Parser for R - stlapi
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**1**) A REST API for Various St Louis Data

Brent Lab has

**11**from R repos:- NetProphet_2.0
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**11**) A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.

Mariana P Braga has

**9**from R repos:- pieridae_hostrep
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**6**) Analysis of host repertoire evolution in Pieridae butterflies - evolnets
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**3**) R package to reconstruct ancestral networks inferred with RevBayes

Open STL has

**8**from R repos:- health-hack-weekend
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**8**) Data, resources, & wiki for OpenSTL Health Hack Weekend 1/16/2015-1/19/2015 - stldata
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**0**) R package containg St. Louis related datasets for teaching

Bruno Vilela de Moraes e Silva has

**7**from R repos:Keith Lohse has

**7**from R repos:- difficulty_EEG
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**2**) Motor learning study in which participants had self-control of difficulty during practice. The study is devided into analyses focus on learning and analyses focused on participants behavior during practice. - cat_learn
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**2**) Category Learning Experiment and Simulations - LMER_Clinical_Science
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**2**) Linear Mixed Effect Regression for Clinical Scientists

Tychele Turner has

**7**from R repos:- plot-protein
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**4**) Plot Protein: Visualization of Mutations - plot-protein-with-conservation
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**3**) Plot Protein: Visualization of Mutations with Conservation - exome_class
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**0**) Codes for exome sequencing class being taught by Tychele N. Turner, Ph.D.

Colby Chiang has

**6**from R repos:Jared Andrews has

**6**from R repos:- EZscRNA
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**3**) Convenient, high-level functions for EZ(-er) scRNA-seq analysis - OneLinerOmics
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**3**) One liner analyses and visualizations for bulk RNA-seq and ChIP-seq data - SingleR
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**0**) Clone of the Bioconductor repository for the SingleR package.

Shane Caldwell has

**6**from R repos:- shinyLimma
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**6**) Extends Limma into a web-app GUI that allows non-programmers to utilize differential expression analysis in their research.

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