### 383 R users in St. Louis

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Joshua Ulrich has

**1,458**from R repos:theHumanBorch has

**439**from R repos:- scRepertoire
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**240**) A toolkit for single-cell immune profiling - escape
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**85**) Easy single cell analysis platform for enrichment - utility
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**71**) Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR

Chris Miller has

**207**from R repos:Kevin Blake has

**207**from R repos:- NatParksPalettes
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**207**) Color palette package inspired by National Parks - PathotypeR
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**0**) E. coli DEC pathotype assignment in R - ConPosER
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**0**) Identify conserved positions in amino acid multiple sequence alignments in R

Chris Prener has

**157**from R repos:Ha X. Dang has

**134**from R repos:The McDonnell Genome Institute has

**124**from R repos:- sciclone
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**108**) An R package for inferring the subclonal architecture of tumors - sciclone-meta
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**6**) accessory scripts and documentation related to the sciclone R package at genome/sciclone - bmm
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**4**) R package that uses a variational Bayesian approach to fitting a mixture of Beta distributions

SLU Data Science Seminar openGIS Project has

**108**from R repos:- postmastr
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**38**) R package for Processing and Parsing Untidy Street Addresses - tidyseg
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**12**) R package with tidy approaches for calculating measures of segregation - covid_daily_viz_archive
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**9**) Daily tracking of Missouri COVID Data

Li Ding's Lab has

**73**from R repos:- PanCanAtlasGermline
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**40**) (No description) - cptac_methylation
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**6**) Methylation array analysis pipeline for CPTAC - gatk4wxscnv
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**5**) Pipeline for WXS CNV using GATK4

Ryan J. Price has

**62**from R repos:Ben Mansfeld has

**60**from R repos:- QTLseqr
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**59**) QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis - CMD2_project
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**1**) Scripts for genetic mapping of CMD2 locus and RNAseq for the CMD2 project - mfusca_figs
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**0**) Malus

Obi Griffith has

**60**from R repos:- biostar-tutorials
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**50**) Code for biostar tutorials - mostly R and Perl - Rtoolbox
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**8**) Modeling precision treatment of breast cancer - RFRS
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**1**) Random Forests Relapse Score

Christopher Lucas has

**49**from R repos:- translateR
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**19**) R Package for Cross-Language Topic Modeling - MatchingFrontier
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**18**) Optimal pruning for imbalance minimization in causal inference - transcribeR
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**10**) R Package for Automated Speech Recognition

Austin F. Frank has

**36**from R repos:Haojia Wu has

**29**from R repos:- plot1cell
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**28**) A R package for advanced single cell data viz - Mouse_DKD_Rx_Atlas
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**1**) (No description) - Bulk_RNAseq_analysis_pipeline
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**0**) (No description)

Keith Lohse has

**27**from R repos:- LMER_Clinical_Science
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**12**) Linear Mixed Effect Regression for Clinical Scientists - ReproRehab
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**4**) R programming exercises for learners enrolled in ReproRehab - LMER_v_RM_ANOVA
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**3**) Comparison of linear mixed-effect regression to repeated-measures analysis of variance for dealing with longitudinal data

Tae-Hyuk Ahn, Ph.D. has

**24**from R repos:Scott Lewis has

**20**from R repos:- ExpressionDB
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**16**) App for hosting gene expression/ontology data with Shiny - Circa-in-Silico
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**2**) Application for generating "in silico" circadian rhythms - CKDapp
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**1**) chronic kidney disease data set

Nathaniel G. Mahieu has

**17**from R repos:- mz.unity
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**14**) mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data - warpgroup
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**3**) The warpgroup algorithm takes multiple LC/MS samples and determines: 1. Segregation of those peaks into compound groups; 2. Per-group consensus integration bounds; 3. Integration bounds for samples in which no peak was detected. - enrich.no12c
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**0**) Proof of concept untargeted enrichment detection

Brent Lab has

**14**from R repos:- NetProphet_2.0
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**12**) A “data light” TF-network mapping algorithm using only gene expression and genome sequence data. - NetProphet_3.0
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**2**) (No description) - brentlabRnaSeqTools
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**0**) (No description)

The McDonnell Genome Institute has

**14**from R repos:- r-cran-ggplot2
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**2**) Unofficial repo for software vendoring or packaging purposes - CummeRbund
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**2**) Unofficial repo for software vendoring or packaging purposes - r-cran-labeling
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**1**) Unofficial repo for software vendoring or packaging purposes

Branson Fox has

**13**from R repos:- hl7r
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**5**) An HL7 Parser for R - stlvacancy
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**5**) A reproducible dataset for estimating vacancy in the City of St. Louis - dashboard
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**1**) St. Louis Crime Dashboard

Margi Sant has

**10**from R repos:- Telecommunications-Customer-Attrition-Dashboard
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**7**) A dynamic dashboard for a telecommunications company to analyze customer attrition rates according to demographic filters. - Data-Mining-R-Bremen-Challenge
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**1**) Create_data_SD iterates csv files containing sensor data for a movement. It extracts 3 standard deviations for each sensor. Then, combines the train_data and features in sd_training_data.csv to be used to build classification models. Create_Test_SD combines challenge.csv and sd features in the sd_testing_data.csv. Sensor files download on website - Cross-Validation-Random-Forest
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**1**) Using k-Fold Cross Validation to find Optimal number of trees

Tychele Turner has

**10**from R repos:- plot-protein
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**5**) Plot Protein: Visualization of Mutations - plot-protein-with-conservation
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**3**) Plot Protein: Visualization of Mutations with Conservation - ElGenomaPequeno
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**2**) El genoma pequeño - analysis workflow for "the little genome"

Christina Del Azodi has

**9**from R repos:- GenomicPrediction_2018
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**9**) Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy - CompBio_Bootcamp
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**0**) Materials for mini-workshops on learning to code for computational biology/bioinformatics. - Biotech_Survey
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**0**) Code for survey analysis regarding public opinion on biotechnology

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