R

299 R users in St. Louis

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Joshua Ulrich has 1,248 from R repos:
  • quantmod (633 ) Quantitative Financial Modelling Framework
  • TTR (264 ) Technical analysis and other functions to construct technical trading rules with R
  • xts (195 ) Extensible time series class that provides uniform handling of many R time series classes by extending zoo.
SLU Data Science Seminar openGIS Project has 200 from R repos:
  • biscale (75 ) Bivariate Mapping with ggplot2
  • postmastr (33 ) R package for Processing and Parsing Untidy Street Addresses
  • qualmap (14 ) R package for working with semi-structured qualitative GIS data
Chris Miller has 182 from R repos:
  • fishplot (135 ) Create timecourse "fish plots" that show changes in the clonal architecture of tumors
  • readDepth (26 ) R package for inferring copy number from read depth
  • copyCat (20 ) a parallel R package for detecting copy-number alterations from short sequencing reads
theHumanBorch has 180 from R repos:
  • scRepertoire (128 ) A toolkit for single-cell immune profiling
  • escape (46 ) Easy single cell analysis platform for enrichment
  • Trex (5 ) Using TCR and expression for graph embedding
The McDonnell Genome Institute has 115 from R repos:
  • sciclone (99 ) An R package for inferring the subclonal architecture of tumors
  • sciclone-meta (6 ) accessory scripts and documentation related to the sciclone R package at genome/sciclone
  • bmm (4 ) R package that uses a variational Bayesian approach to fitting a mixture of Beta distributions
Ha X. Dang has 114 from R repos:
  • clonevol (112 ) Inferring and visualizing clonal evolution in multi-sample cancer sequencing
  • sciclone (1 ) An R package for inferring the subclonal architecture of tumors
  • trees (1 ) Simulate and plot trees in R
Ryan J. Price has 58 from R repos:
  • loggit (32 ) Modern Logging for the R Ecosystem
  • readit (25 ) [RETIRED] Effortlessly Read Any Rectangular Data Into R
  • stl_rug (1 ) Materials for STL R User Group presentations
Li Ding's Lab has 55 from R repos:
Ben Mansfeld has 50 from R repos:
  • QTLseqr (50 ) QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
  • drat (0 ) Drat R Archive Template
Christopher Lucas has 44 from R repos:
  • MatchingFrontier (18 ) Optimal pruning for imbalance minimization in causal inference
  • translateR (15 ) R Package for Cross-Language Topic Modeling
  • transcribeR (9 ) R Package for Automated Speech Recognition
Austin F. Frank has 34 from R repos:
  • R-hacks (31 ) useful bits of code for programming and analysis in R
  • bgm-jags (3 ) Using JAGS to re-implement examples and problems from Lee and Wagenmaker's "Bayesian Graphical Modeling"
Tae-Hyuk Ahn has 17 from R repos:
  • LONGO (6 ) Gene Length-Dependent Expression Analysis Tool in Neuronal Cells
  • iCAT (6 ) iCAT: Immune Cells Analysis software Tool
  • MegaR (5 ) megaR: An Interactive R Package for Metagenomic Sample Classification and Disease Prediction using Microbiota and Machine Learning
Nathaniel G. Mahieu has 17 from R repos:
  • mz.unity (14 ) mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data
  • warpgroup (3 ) The warpgroup algorithm takes multiple LC/MS samples and determines: 1. Segregation of those peaks into compound groups; 2. Per-group consensus integration bounds; 3. Integration bounds for samples in which no peak was detected.
  • ExData_Plotting1 (0 ) Plotting Assignment 1 for Exploratory Data Analysis
Scott Lewis has 16 from R repos:
  • ExpressionDB (15 ) App for hosting gene expression/ontology data with Shiny
  • Circa-in-Silico (1 ) Application for generating "in silico" circadian rhythms
  • RStartHere (0 ) A guide to some of the most useful R Packages that we know about
The McDonnell Genome Institute has 14 from R repos:
  • r-cran-ggplot2 (2 ) Unofficial repo for software vendoring or packaging purposes
  • CummeRbund (2 ) Unofficial repo for software vendoring or packaging purposes
  • r-bioc-biostrings (1 ) Unofficial repo for software vendoring or packaging purposes
Branson Fox has 13 from R repos:
  • hl7r (5 ) An HL7 Parser for R
  • stlvacancy (5 ) A reproducible dataset for estimating vacancy in the City of St. Louis
  • stlapi (1 ) A REST API for Various St Louis Data
Brent Lab has 12 from R repos:
Mariana P Braga has 9 from R repos:
  • pieridae_hostrep (6 ) Analysis of host repertoire evolution in Pieridae butterflies
  • evolnets (3 ) R package to reconstruct ancestral networks inferred with RevBayes
Keith Lohse has 8 from R repos:
  • cat_learn (2 ) Category Learning Experiment and Simulations
  • difficulty_EEG (2 ) Motor learning study in which participants had self-control of difficulty during practice. The study is devided into analyses focus on learning and analyses focused on participants behavior during practice.
  • LMER_Clinical_Science (2 ) Linear Mixed Effect Regression for Clinical Scientists
Open STL has 8 from R repos:
  • health-hack-weekend (8 ) Data, resources, & wiki for OpenSTL Health Hack Weekend 1/16/2015-1/19/2015
  • stldata (0 ) R package containg St. Louis related datasets for teaching
Bruno Vilela de Moraes e Silva has 7 from R repos:
  • letsR (6 ) Package letsR
  • sampler (1 ) Functions to generate overdispersed and aggregated sampling designs in the geographic, phylogenetic or any trait/variable space.
  • OUwie (0 ) Estimates and compares rate differences of continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck (OU) models that allow the strength of selection and drift to vary across selective regimes.
Tychele Turner has 7 from R repos:
Wanqing Shao has 7 from R repos:
Colby Chiang has 6 from R repos:
  • cnvgram (4 ) Draw CNV diagrams
  • voir (2 ) Tools for graphically viewing data
Jared Andrews has 6 from R repos:
  • OneLinerOmics (3 ) One liner analyses and visualizations for bulk RNA-seq and ChIP-seq data
  • EZscRNA (3 ) Convenient, high-level functions for EZ(-er) scRNA-seq analysis
  • escape (0 ) Easy single cell analysis platform for enrichment
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