451 R users in St. Louis
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Joshua Ulrich has 1,637 from R repos:
Kevin Blake, PhD has 246 from R repos:
- NatParksPalettes (243 ) Color palette package inspired by National Parks
- ConPosER (3 ) Identify conserved positions in amino acid multiple sequence alignments in R
- ganttGenerator (0 ) Generates project timeline figures
Chris Miller has 224 from R repos:
Chris Prener has 159 from R repos:
Ha X. Dang has 149 from R repos:
The McDonnell Genome Institute has 136 from R repos:
- sciclone (117 ) An R package for inferring the subclonal architecture of tumors
- sciclone-meta (9 ) accessory scripts and documentation related to the sciclone R package at genome/sciclone
- bmm (4 ) R package that uses a variational Bayesian approach to fitting a mixture of Beta distributions
SLU Data Science Seminar openGIS Project has 107 from R repos:
- postmastr (38 ) R package for Processing and Parsing Untidy Street Addresses
- tidyseg (13 ) R package with tidy approaches for calculating measures of segregation
- covid_daily_viz_archive (9 ) Daily tracking of Missouri COVID Data
Li Ding's Lab has 102 from R repos:
- PanCanAtlasGermline (43 ) (No description)
- ST_subclone_publication (10 ) Code for spatial subclone paper
- cptac_methylation (8 ) Methylation array analysis pipeline for CPTAC
theHumanBorch has 92 from R repos:
Ben Mansfeld has 77 from R repos:
- QTLseqr (75 ) QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
- mfusca_figs (1 ) Malus
- CMD2_project (1 ) Scripts for genetic mapping of CMD2 locus and RNAseq for the CMD2 project
Ryan J. Price has 62 from R repos:
Obi Griffith has 60 from R repos:
- biostar-tutorials (50 ) Code for biostar tutorials - mostly R and Perl
- Rtoolbox (8 ) Modeling precision treatment of breast cancer
- analysis-projects-R (1 ) (No description)
Christopher Lucas has 51 from R repos:
- translateR (21 ) R Package for Cross-Language Topic Modeling
- MatchingFrontier (18 ) Optimal pruning for imbalance minimization in causal inference
- transcribeR (10 ) R Package for Automated Speech Recognition
Keith Lohse has 40 from R repos:
- LMER_Clinical_Science (19 ) Linear Mixed Effect Regression for Clinical Scientists
- ReproRehab (6 ) R programming exercises for learners enrolled in ReproRehab
- LMER_v_RM_ANOVA (4 ) Comparison of linear mixed-effect regression to repeated-measures analysis of variance for dealing with longitudinal data
Haojia Wu has 37 from R repos:
- plot1cell (36 ) A R package for advanced single cell data viz
- Mouse_DKD_Rx_Atlas (1 ) (No description)
- Bulk_RNAseq_analysis_pipeline (0 ) (No description)
Austin F. Frank has 36 from R repos:
Tae-Hyuk Ahn, Ph.D. has 23 from R repos:
Tychele Turner has 22 from R repos:
- ElGenomaPequeno (7 ) El genoma pequeño - analysis workflow for "the little genome." This repository holds a computational workflow to analyze the mitochondrial genome.
- plot-protein (6 ) Plot Protein: Visualization of Mutations
- plot-protein-with-conservation (4 ) Plot Protein: Visualization of Mutations with Conservation
Scott Lewis has 21 from R repos:
- ExpressionDB (17 ) App for hosting gene expression/ontology data with Shiny
- Circa-in-Silico (2 ) Application for generating "in silico" circadian rhythms
- CKDapp (1 ) chronic kidney disease data set
Branson Fox has 17 from R repos:
- hl7r (9 ) An HL7 Parser for R
- stlvacancy (5 ) A reproducible dataset for estimating vacancy in the City of St. Louis
- stlapi (1 ) A REST API for Various St Louis Data
Nathaniel G. Mahieu has 17 from R repos:
- mz.unity (14 ) mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data
- warpgroup (3 ) The warpgroup algorithm takes multiple LC/MS samples and determines: 1. Segregation of those peaks into compound groups; 2. Per-group consensus integration bounds; 3. Integration bounds for samples in which no peak was detected.
- doRedis (0 ) R/foreach Redis backend for parallel computing
Brent Lab has 16 from R repos:
- NetProphet_2.0 (13 ) A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.
- NetProphet_3.0 (2 ) (No description)
- GOeval (1 ) Gene Regulatory Network Evaluation Using Gene Ontology
Donald Danforth Plant Science Center has 14 from R repos:
- pcvr (4 ) R functions for use with plantCV output
- brachypodium-heat-drought-paper (2 ) PlantCV python scripts for image analysis; R scripts for data filtering, organizing, and analysis; shell scripts for SNP calling and population structure estimation; input data files for all analyses
- pgwasdbc (1 ) R Package that handles and maintains a connection to GWAS database.
The McDonnell Genome Institute has 14 from R repos:
- CummeRbund (2 ) Unofficial repo for software vendoring or packaging purposes
- r-cran-ggplot2 (2 ) Unofficial repo for software vendoring or packaging purposes
- r-cran-labeling (1 ) Unofficial repo for software vendoring or packaging purposes
Margi Sant has 13 from R repos:
- Telecommunications-Customer-Attrition-Dashboard (9 ) A dynamic dashboard for a telecommunications company to analyze customer attrition rates according to demographic filters.
- Data-Mining-R-Bremen-Challenge (1 ) Create_data_SD iterates csv files containing sensor data for a movement. It extracts 3 standard deviations for each sensor. Then, combines the train_data and features in sd_training_data.csv to be used to build classification models. Create_Test_SD combines challenge.csv and sd features in the sd_testing_data.csv. Sensor files download on website
- Cross-Validation-Random-Forest (1 ) Using k-Fold Cross Validation to find Optimal number of trees
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